Carbapenem Resistant Klebsiella pneumoniae Cases from India: An Overview of Current Knowledge

Download Article

DOI: 10.21522/TIJPH.2013.13.01.Art084

Authors : Sathasivam Sivamalar, Justy Babu

Abstract:

Carbapenem-resistant Klebsiella pneumoniae (CRKP) is a significant public health concern in India. Our current review attempts a qualitative summary of observational studies published in the last ten years. The key resistance mechanisms identified include carbapenemase enzymes like New Delhi Metallo-beta-lactamase (NDM-1), Oxacillinase-48 (OXA-48), and Klebsiella pneumoniae carbapenemase (KPC), as well as non-enzymatic factors such as efflux pump overexpression and alterations in outer membrane porins (OmpK35, OmpK36). Horizontal gene transfer via plasmids and transposons was also observed to accelerate the dissemination of resistance genes. Carbapenem resistance rates in India have surged from 9% in 2008 to approximately 60% by 2024. Environmental contamination from untreated industrial and hospital waste, along with antibiotic overuse, also significantly contributed to the increased spread of CRKp strains and is associated with mortality rates of around 68%. Challenges in the diagnosis of CRKp cases arise from limitations of phenotypic methods and the non-availability of genotypic techniques such as PCR and whole-genome sequencing in resource-constrained settings. Treatment options against CRKp are limited, often relying on last-resort antibiotics like polymyxins and tigecycline, which also have significant side effects and face rising resistance. Emerging therapies, including novel β-lactam/β-lactamase inhibitor combinations and agents like cefiderocol, show a promising option but require further validation. Therefore, an urgent, integrated approach is recommended to combat rising CRKp infections in India, which involves enhancing surveillance systems, strengthening antimicrobial stewardship programs, improving infection control practices within healthcare facilities, and promoting public education on the risks of antibiotic misuse.

References:

[1].   Ahmadi, Z., Noormohammadi, Z., Behzadi, P., & Ranjbar, R., 2022, Molecular detection of gyra mutation in clinical strains of Klebsiella pneumoniae. Iranian Journal of Public Health, 51(10), 2334–2339.

[2].   Shamanna, V., Srinivas, S., Couto, N., Nagaraj, G., Sajankila, S. P., Krishnappa, H. G., Kumar, K. A., Aanensen, D. M., & Lingegowda, R. K., 2024, Geographical distribution, disease association and diversity of klebsiella pneumoniae k/l and o antigens in india: roadmap for vaccine development. Microbial genomics, 10(7).

[3].   Indrajith, S., Mukhopadhyay, A. K., Chowdhury, G., Farraj, D. A. A., Alkufeidy, R. M., Natesan, S., Meghanathan, V., Gopal, S., &Muthupandian, S., 2020, Molecular insights of carbapenem resistance Klebsiella pneumoniae isolates with focus on multidrug resistance from clinical samples. Journal of Infection and Public Health, 14(1), 131–138.

[4].   Shankar, C., Nabarro, l. E., Anandan, S., et al., 2018, Extremely high mortality rates in patients with carbapenem-resistant, hypermucoviscous Klebsiella pneumoniae blood stream infections. The journal of the association of physicians of india, 66(12), 13–16.

[5].   Das, B. J., Banerjee, T., Wangkheimayum, J., et al., 2024, Characterization of blaoxa-232 carrying carbapenem-resistant Klebsiella pneumoniae (crkp) & their expression profiles under selective carbapenem pressure: an in-depth study from India. The Indian Journal of Medical Research, 159(6), 644–652.

[6].   Verma, G., Nayak, S. R., Jena, S., Panda, S. S., Pattnaik, D., Praharaj, A., & Singh, N., 2023, Prevalence of carbapenem-resistant enterobacterales, Acinetobacter baumannii, and pseudomonas aeruginosa in a tertiary care hospital in eastern India: a pilot study. Journal of Pure and Applied Microbiology, 17(4), 2243–2249.

[7].   Veeraraghavan, B., Shankar, C., Karunasree, S., Kumari, S., Ravi, R., & Ralph, R., 2017, Carbapenem resistant Klebsiella pneumoniae isolated from bloodstream infection: indian experience. Pathogens and Global Health, 111(5), 240–246.

[8].   Kunjalwar, R., &Mudey, G., 2024, A cross-sectional study on endemicity of vim, ndm, kpc, ipm& oxa-48 genes in carbapenemase producing Klebsiella pneumoniae and Escherichia coli from a tertiary hospital using mcim, ecim, and pcr in central india. F1000research, 13, 636.

[9].   Mohanty, S., Mittal, G., &Gaind, R., 2017, Identification of carbapenemase-mediated resistance among enterobacteriaceae bloodstream isolates: a molecular study from India. Indian journal of medical microbiology, 35(3), 421–425.

[10].  Firoozeh, F., Mahluji, Z., Shams, E., Khorshidi, A., &Zibaei, M., 2017, New delhimetallo-β-lactamase-1-producing klebsiella pneumoniae isolates in hospitalized patients in kashan, iran. Iranian Journal of Microbiology, 9(5), 283–287.

[11].  Mulvey, M. R., Grant, J. M., Plewes, K., Roscoe, D., &Boyd, D. A., 2011, New Delhi metallo-β-lactamase in Klebsiella pneumoniae and Escherichia coli, Canada. Emerging infectious diseases, 17(1), 103–106.

[12].  Gupta, V., Garg, R., Kumaraswamy, K., et al., 2018, Phenotypic and genotypic characterization of carbapenem resistance mechanisms in Klebsiella pneumoniae from blood culture specimens: a study from north India. Journal of Laboratory Physicians, 10(02), 125-129.

[13].  Nachimuthu, R., Subramani, R., Maray, S., Gothandam, K. M., Sivamangala, K., Manohar, P., & Bozdogan, B., 2016, Characterization of carbapenem-resistant gram-negative bacteria from Tamil Nadu. Journal of chemotherapy, 28(5), 371–374.

[14].  Tsai, Y., Fung, C., Lin, J., Chen, J., Chang, F., Chen, T., & Siu, l. K., 2011, Klebsiella pneumoniae outer membrane porins ompk35 and ompk36 play roles in both antimicrobial resistance and virulence. Antimicrobial agents and chemotherapy, 55(4), 1485–1493.

[15].  Kong, H., Pan, Q., Lo, W., Liu, X., Law, C. O. K., Chan, T., Ho, P., &Lau, T. C., 2018, Fine-tuning carbapenem resistance by reducing porin permeability of bacteria activated in the selection process of conjugation. Scientific reports, 8(1).

[16].  Gupta, A. K., Chauhan, D. S., Srivastava, K., Das, R., Batra, S., & Mittal, M., 2010, Estimation of efflux-mediated multi-drug resistance and its correlation with expression levels of two major efflux pumps in mycobacteria. Journal of communicable diseases, 38(3), 246-254.

[17].  Garima, K., Pathak, R., Tandon, R., Rathor, N., Sinha, R., &Bose, M., 2015, Differential expression of efflux pump genes of Mycobacterium tuberculosis in response to varied subinhibitory concentrations of anti-tuberculosis agents. Tuberculosis (edinburgh), 95(2), 155-161.

[18].  Narang, A., Garima, K., Porwal, S., Bhandekar, A., Shrivastava, K., Giri, A., Sharma, N. K., Bose, M., & Varma-basil, M., 2019b, Potential impact of efflux pump genes in mediating rifampicin resistance in clinical isolates of Mycobacterium tuberculosis from India. Plos one, 14(9), e0223163.

[19].  Bhatia, M., Shamanna, V., Nagaraj, G., Sravani, D., Gupta, P., Omar, B. J., Chakraborty, D., &Ravikumar, K. L., 2021, Molecular characterisation of carbapenem-resistantklebsiellapneumoniaeclinical isolates: preliminary experience from a tertiary care teaching hospital in the himalayas. Transactions of the royal society of tropical medicine and hygiene, 116(7), 655–662.

[20].  Tayyaba, U., Khan, S. W., Sultan, A., Khan, F., Akhtar, A., Nagaraj, G., Ahmed, A., &Bhattacharya, B., 2024, Molecular characterization of mdr and xdr clinical strains from a tertiary care center in North India by whole genome sequence analysis. Journal of the Oman Medical Association, 1(1), 29–47.

[21].  Shukla, S., Desai, S., Bagchi, A., Singh, P., Joshi, .M, Joshi, C., Patankar, J., maheshwari, P., Rajni, E., Shah, M., &Gajjar, d., 2023, Diversity and distribution of β-lactamase genes circulating in indian isolates of multidrug-resistant Klebsiella pneumoniae. Antibiotics, 12(3), 449.

[22].  Spadar, A., Phelan, J., Elias, R., Modesto, A., Caneiras, C., Marques, C., Lito, l., Pinto, M., Cavaco-silva, P., Ferreira, H., Pomba, C., Da silva, G. J., aSavedra, M. J., Melo-cristino, J., Duarte, A., Campino, S., Perdigão, J., &Clark, T. G., 2022, Genomic epidemiological analysis of Klebsiella pneumoniae from portuguese hospitals reveals insights into circulating antimicrobial resistance. Scientific reports, 12(1).

[23].  Li, P., Luo, W., Xiang, T., Jiang, Y., Liu, P., Wei, D., Fan, l., Huang, S., Liao, W., Liu, Y., & Zhang, W., 2022, Horizontal gene transfer via omvs co-carrying virulence and antimicrobial-resistant genes is a novel way for the dissemination of carbapenem-resistant hypervirulent Klebsiella pneumoniae. Frontiers in microbiology, 13. Https://doi.org/10.3389/fmicb.2022.945972

[24].  Apisarnthanarak, A., Hsu, l. Y., Khawcharoenporn, T., & Mundy, l. M., 2013, Carbapenem-resistant gram-negative bacteria: how to prioritize infection prevention and control interventions in resource-limited settings. Expert review of anti-infective therapy, 11(2), 147-157.

[25].  Muresu, N., Deiana, G., Dettori, M., Palmieri, A., Masia, M. D., Cossu, A., . &Castiglia, p., 2023, Infection prevention control strategies of new delhimetallo-β-lactamase producing Klebsiella pneumoniae. In healthcare (vol. 11, no. 18, p. 2592). Mdpi.

[26].  Anagnostopoulos, D. A., Parlapani, F. F., Natoudi, S., Syropoulou, F., Kyritsi, M., Vergos, I., Hadjichristodoulou, C., Kagalou, I., &Boziaris, I. S., 2022, Bacterial communities and antibiotic resistance of potential pathogens involved in food safety and public health in fish and water of lake karla, thessaly, greece. Pathogens, 11(12), 1473.

[27].  Sivalingam, P. J., Poté, & Prabakar, K., 2019, Environmental prevalence of carbapenem resistance enterobacteriaceae (cre) in a tropical ecosystem in India: human health perspectives and future directives. Pathogens, 8(4), 174.

[28].  Sree, R. A., Gupta, A., Gupta, N., Veturi, S., Reddy, L. S. K., Begum, M., Shravani, E., Challa, H. R., Reddy, S. S., Singamsetty, A., Arumilli, M., Reddy, P. N., & Tirlangi, P. K., 2024, Ceftazidime-avibactam alone or in combination with Aztreonam versus Polymyxins in the management of carbapenem-Resistant Klebsiella pneumoniae nosocomial Infections (CAPRI study): a retrospective cohort study from South India. Infection52(2), 429–437.

[29].  Kim, H. K., Park, J. S., Sung, H., &Kim, M. N., 2015, Further modification of the modified hodge test for detecting metallo-β-lactamase-producing carbapenem-resistant enterobacteriaceae. Annals of laboratory medicine, 35(3), 298.

[30].  Hamal, D., Shrestha, R., Paudel, R., Nayak, N., Bhatta, D. R., & Gokhale, s., 2023, Combined disc test and modified hodge test for detection of carbapenemase-producing gram-negative bacilli. Nepal journal of medical sciences, 8(2), 15-21.

[31].  Wang, Y., Huang, X., Yin, D., Shen, S., Jian, C., Sun, Z., &Chen, Z, 2024, Modification of carbapenemase inhibition test and comparison of its performance with ng-test carba 5 for detection of carbapenemase-producing enterobacterales. Journal of applied microbiology, lxae197.

[32].  Kibwana, U. O., Manyahi, J., Moyo, S. J., Blomberg, B., Roberts, A. P., Langeland, N., &Mshana, S. E., 2024, Antimicrobial resistance profile of enterococcus species and molecular characterization of vancomycin resistant enterococcus faecium from the fecal samples of newly diagnosed adult hiv patients in dar es salaam, tanzania. Frontiers in tropical diseases, 5, 1307379.

[33].  Christina, S., Praveena, R., Shahul, M. R., &Saikumar, c., 2024, Carbapenemase-producing escherichia coli: comparison of a novel rapid lateral flow assay with the polymerase chain reaction (pcr) and antimicrobial resistance pattern. Cureus, 16(9), e68941.

[34].  Way, Y. A., Huang, C. W., Liao, W. C., Li, S. W., Chiang, R. L., Hsing, E. W., &Hsieh, y. C., 2024, Sequential use of capsular typing and whole-genome sequencing-based analysis for transmission of carbapenem-resistant acinetobacter baumannii in a tertiary medical center. Journal of microbiology, immunology and infection.

[35].  Naik, V. V., Kumar, S., Thrimurthy, T., Channareddy, V., &Shaw, T., 2024, Enhancing carbapenem resistance detection: lamp coupled with melting curve analysis-for rapid molecular diagnostics in clinical specimens.

[36].  Tempe, D. K., Agarwal, J., Chaudhary, K., Lalwani, P., Tudu, M. S., Hansdah, U., &Mishra, B., 2015, Carbapenem resistance patterns in general intensive care unit of a tertiary care hospital in india. Mamc journal of medical sciences, 1(2), 85-91.

[37].  Veeraraghavan, B., Shankar, C., Karunasree, S., Kumari, S., Ravi, R., & Ralph, R., 2017, Carbapenem resistant Klebsiella pneumoniae isolated from bloodstream infection: indian experience. Pathogens and global health, 111(5), 240-246.

[38].  Way, Y. A., Huang, C. W., Liao, W. C., Li, S. W., Chiang, R. L., Hsing, E. W., &Hsieh, y. C., 2024, Sequential use of capsular typing and whole-genome sequencing-based analysis for transmission of carbapenem-resistant acinetobacter baumannii in a tertiary medical center. Journal of microbiology, immunology and infection.

[39].  Vieceli, T., Henrique, l. R., Rech, T. H., & Zavascki, A. P., 2024, Colistin versus polymyxin b for the treatment of carbapenem-resistant klebsiella pneumoniae bloodstream infections. Journal of infection and chemotherapy, 30(7), 621-625.

[40].  Tiseo, G., Galfo, V., Riccardi, N., Suardi, l. R., Pogliaghi, M., Giordano, C., &Falcone, m., 2024, Real-world experience with meropenem/vaborbactam for the treatment of infections caused by esbl-producing enterobacterales and carbapenem-resistant Klebsiella pneumoniae. European journal of clinical microbiology & infectious diseases, 1-8.

[41].  Sophonsri, A., Kalu, M., & Wong-beringer, A., 2024, Comparative in vitro activity of ceftazidime-avibactam, imipenem-relebactam, and meropenem-vaborbactam against carbapenem-resistant clinical isolates of Klebsiella pneumoniae and Pseudomonas aeruginosa. Antibiotics, 13(5), 416.

[42].  Yang, C., Wang, l., Lv, J., Wen, Y., Gao, Q., Qian, F., & Du, H., 2024, Effects of different carbapenemase and siderophore production on cefiderocol susceptibility in Klebsiella pneumoniae. Antimicrobial agents and chemotherapy, e01019-24.

[43].  Mantzarlis, K., Manoulakas, E., Parisi, K., Sdroulia, E., Zapaniotis, N., Tsolaki, V., &Makris, D., 2024, Meropenem plus ertapenem and ceftazidime–avibactam plus aztreonam for the treatment of ventilator associated pneumonia caused by pan-drug resistant Klebsiella pneumoniae. Antibiotics, 13(2), 141.

[44].  Zhong, W., Fu, Y., Liao, X., Xu, N., Shen, l., Wu, J., & Yang, C., 2024, Enhancing safe and effective treatment of carbapenem-resistant Klebsiella pneumoniae with polymyxin b-loaded dendritic nanoparticles. Chemical Engineering Journal, 498, 155753.

[45].  Kou, X., Yang, X., & Zheng, R., 2024, Challenges and opportunities of phage therapy for klebsiella pneumoniae infections. Applied and environmental microbiology, e01353-24.

[46].  Zhou, H., Du, X., Wang, Y., Kong, J., Zhang, X., Wang, W., . & Ye, J., 2024, Antimicrobial peptide a20l: in vitro and in vivo antibacterial and antibiofilm activity against carbapenem-resistant Klebsiella pneumoniae. Microbiology spectrum, 12(8), e03979-23.

[47].  Zhu, J., Chen, T., Ju, Y., Dai, J., &Zhuge, X., 2024, Transmission dynamics and novel treatments of high risk carbapenem-resistant Klebsiella pneumoniae: the lens of one health. Pharmaceuticals, 17(9), 1206.

[48].  Fritzenwanker, M., Imirzalioglu, C., Herold, S., Wagenlehner, F. M., Zimmer, K. P., &Chakraborty, T., 2018, Treatment options for carbapenem- resistant gram-negative infections. Deutschesarzteblatt international, 115(20-21), 345–352.

[49].  Kontopidou, F., Giamarellou, H., Katerelos, P., Maragos, A., Kioumis, I., Trikka-graphakos, E., Valakis, C., &Maltezou, H., 2013, Infections caused by carbapenem-resistant Klebsiella pneumoniae among patients in intensive care units in greece: a multi-centre study on clinical outcome and therapeutic options. Clinical microbiology and infection, 20(2), o117–o123.

[50].  Tesfa, T., Mitiku, H., Edae, M., &Assefa, N., 2022, Prevalence and incidence of carbapenem-resistant K.pneumoniae colonization: systematic review and meta-analysis. Systematic reviews, 11(1), 240.

[51].  Ramasubramanian, V., Porwal, R., &Rajesh, N., 2014, Carbapenem resistant gram-negative bacteremia in an indian intensive care unit: a review of the clinical profile and treatment outcome of 50 patients. Indian journal of critical care medicine, 18(11), 750–753.

[52].  Suay-García, B., &Pérez-gracia, M. T., 2021, Present and future of carbapenem-resistant enterobacteriaceae infections. Advances in clinical immunology, medical microbiology, COVID-19, and big data, 435-456.

[53].  Mascellino, M. T., Oliva, A., Biswas, S., & Ceccarelli, G., 2024, Editorial: New therapeutic strategies against carbapenem-resistant Gram-negative bacteria. Frontiers in microbiology,15, 1513900. https://doi.org/10.3389/fmicb.2024.1513900

[54].  Swaminathan, S., Routray, A., & Mane, A., 2022, Early and appropriate use of ceftazidime-avibactam in the management of multidrug-resistant gram-negative bacterial infections in the indian scenario. Cureus, 14(8), e28283.

[55].  Muresu, N., Deiana, G., Dettori, M., Palmieri, A., Masia, M. D., Cossu, A., &Castiglia, P., 2023, Infection prevention control strategies of new delhimetallo-β-lactamase producing Klebsiella pneumoniae. In healthcare (vol. 11, no. 18, p. 2592). Mdpi.

[56].  Amit, S., Mishali, H., Kotlovsky, T., Schwaber, M. J., &Carmeli, Y., 2014, Bloodstream infections among carriers of carbapenem-resistant klebsiella pneumoniae: etiology, incidence and predictors. Clinical microbiology and infection, 21(1), 30–34.

[57].  Kaur, J. N., Singh, N., Smith, N. M., Klem, J. F., Cha, R., Lang, Y., . &Tsuji, B. T., 2024, Next-generation antibiotic combinations to combat pan-drug resistant Klebsiella pneumoniae. Scientific reports, 14(1), 3148.

[58].  Hu, F., Pan, Y., Li, H., Han, H., Liu, X., Ma, R., & He, P., 2024, Carbapenem-resistant klebsiella pneumoniae capsular types, antibiotic resistance and virulence factors in China: a longitudinal, multi-centre study. Nature microbiology, 9(3), 814-829.

[59].  Ph, S., Attavar, P. C., Tr, R., Kotian, M. S., & Ns, D., 2024, Emergence of high-level antibiotic resistance in Klebsiella pneumoniae: a narrative review. South asian journal of research in microbiology, 18(2), 1-8. https://doi.org/10.9734/sajrm/2024/v18i2343